Cluster Extended Dynamical Mean Field Approach and Unconventional Superconductivity

The extended dynamical mean field theory has played an important role in the study of quantum phase transitions in heavy fermion systems. In order to incorporate the physics of unconventional superconductivity, we develop a cluster version of the extended dynamical mean field theory. In this approach, we show how magnetic order and superconductivity develop as a result of inter-site spin exchange interactions, and analyze in some detail the form of correlation functions. We also discuss the methods that can be used to solve the dynamical equations associated with this approach. Finally, we consider different settings in which our approach can be applied, including the periodic Anderson model for heavy fermion systems.Comment: 15 pages, 2 figures, Replaced with published versio

Characterisation of de-structured starch and its interactions in whey protein isolate gels : a thesis submitted in partial fulfilment of the requirements for the degree of Doctor of Philosophy in Food Technology at Massey University, Palmerston North, New Zealand

Permission from Elsevier was granted for the re-use of four articles published in Food Hydrocolloids. Figures 2-2, 2-4, 2-5, 2-6, 2-8, 2-9, 2-12, 2-14, 2-16, 3-7, 3-8, 3-9, 3-19, 3-20 & 3-22 are also re-used with permission. Figures 2-3, 2-7 & 2.10 are re-used under a Creative Commons CC-BY license.Starch serves as an important additive to enhance the physico-chemical properties of many food products. With the increased pursuit of natural products, there is an increasing demand for “clean-label” starches. In this study, waxy potato starch was physically-modified at elevated temperatures of 120–150 °C for 30 min at 300 rpm, in a pressurised reactor. The treatment converted native starch granules into their macromolecular chains (denoted as de-structured waxy potato starch, DWPS). This doctoral thesis presents the: (i) method of modifying starch (i.e., the de-structuring process), (ii) the mechanism of starch de-structuring, (iii) the rheological changes in DWPS samples and the shear-thickening mechanism, and (iv) the interactions of these DWPS ingredients with whey protein isolate (WPI) in a protein-based gel system, at different pH and ionic strength. The molar mass (Mᵥᵥ), particle size, rheological properties, degree of branching (DB) and side-chain length distribution of DWPS samples were characterised to elucidate the starch de-structuring mechanism. DWPS treated at 120 °C DWPS showed similar Mᵥᵥ (~3.6 × 10⁸ Da) as its native form (~3.7 × 10⁸ Da) indicating that the treatment at 120 °C resulted in the disassembly of starch granules into their macromolecular chains. Reduction in viscosity, Mᵥᵥ and particle size was observed with an increase in temperature from 120 to 150 °C, suggesting a cleavage in amylopectin chains. The DB and side-chain distribution data suggest that the reduction in Mᵥᵥ is likely due to the cleavage at α-1,4 linkages near the middle of the main amylopectin backbone. Particle size analysis by laser diffraction measurements revealed the presence of large fragment particles (> 1 µm) in DWPS samples, indicating that the starch de-structuring process into its macromolecules was incomplete even at 150 °C for 30 min. The DWPS (5% w/w) samples were found to exhibit a wide range of rheological properties—Newtonian, shear-thinning, shear-thickening and anti-thixotropy behaviours—depending on their treatment temperature (120–150 °C). In particular, 120 °C DWPS exhibited interesting shear-thickening, anti-thixotropy and shear-induced gelation. These rheological properties are different from the shear-thinning and thixotropy behaviours observed in most conventionally gelatinised waxy potato starches treated at 95 °C. The complex shear-induced structures of 120 °C DWPS were attributed to a two-step process: (i) upon shear at the critical shear rate (~10–20 s⁻¹), the shear stress caused a size reduction in the starch fragments and (ii) the increased number of small fragments together with the amylopectin chains in very close proximity could lead to the formation of a complex network probably consisting of amylopectin chains and a large number of fragments (2–20 μm). Shear thickening properties were attributed largely to these soft fragment particles colliding and sliding past each other during shear. The data from this study has also shown that the hydrogen bonding, electrostatic, hydrophobic interactions, or the combination of these interactions did not cause the shear-thickening behaviour. The influence of 4% w/w DWPS on 13% w/w WPI gels was studied by characterising the phase stability of the liquid mixtures, and mechanical properties, microstructure, and water-immersion stability of fine-stranded polymeric and coarse-stranded particulate protein gels at pH 7 and pH 5, respectively. At neutral pH, synergistic gel hardness of WPI was obtained with the incorporation of 140 °C DWPS. The increased gel strength was attributed to the enhanced density of a very fine-stranded gel network. The ability of the gel to retain its shape when immersed in water for 40 h was most noticeable for the composite gels containing either gelatinised starch or DWPS samples (swollen gels but with intact shape). In contrast, pure WPI gel and composite gel containing maltodextrin turned into very weak fluid-like and disintegrated gels, respectively. At pH 5, WPI formed particulate gels. The addition of gelatinised starch or DWPS weakened the particulate protein gels, likely due to phase separation and interrupted protein network with starch polymers acting as inactive fillers. The effects of NaCl and CaCl₂ (i.e., type of salts and ionic strength) on the mechanical and microstructural properties of composite gels containing 13% w/w WPI and 4% w/w 140 °C DWPS were also evaluated. Thermodynamic incompatibility between WPI and 140 °C DWPS was observed upon the addition of NaCl (~75 mM) or CaCl₂ (10–75 mM). The combined effects of such thermodynamic incompatibility with the changes in protein connectivity induced by varied ionic strength led to the formation of distinctive gel structures (inhomogeneous self-supporting gels with a liquid centre and weak gels with paste-like consistency) that were different from thermodynamic compatible homogeneous self-supporting gels (pure WPI and WPI + maltodextrin gels). At ≥ 250 mM NaCl, instead of a paste-like texture, a recovered soft self-supporting gel structure was observed when using 140 °C DWPS. The ability to generate a range of textures in WPI gelation-based foods by using 140 °C DWPS under different ionic conditions, is a feasible strategy for structuring high-protein foods for dysphagia—aimed to be either thickened fluids or soft solids. Additionally, this acquired knowledge is also relevant when formulating food gels for 3-D printing. The desirable rheological properties of DWPS samples and their ability to alter WPI gel structure signify the potential of DWPS as a clean-label ingredient to structure foods of specific needs (e.g., whipping cream for enhanced structure upon shear and high-protein foods for dysphagia sufferers)

Design and analysis of a ducted fan UAV

The ducted fan unmanned aerial vehicle (UAV) can operate in vertical flight and horizontal flight. A new tilt-body ducted fan UAV with wings, which is capable of high-speed forward flight in wing-borne mode, is designed. Two fixed wings can provide sufficient lift of the ducted fan UAV in the high-speed wing-borne flight. The fixed geometry duct design reflects a compromise between low and high speed performance requirements of it. Computational fluid dynamics (CFD) and wind tunnel testing are used to study its aerodynamic characteristics in various modes. Momentum source items are utilized to replace two counter-rotating propellers in the numerical simulation. The results illustrate that the ducted fan MAV designed can hover, take off and land vertically. Furthermore, it has the ability to fly slowly in helicopter mode and fly rapidly in wing-borne mode and has excellent aerodynamic characteristics throughout the whole flight envelope

DNA base sequence effects on bulky lesion-induced conformational heterogeneity during DNA replication

4-Aminobiphenyl (ABP) and its structure analog 2-aminofluorene (AF) are well-known carcinogens. In the present work, an unusual sequence effect in the 5′-CTTCTG1G2TCCTCATTC-3′ DNA duplex is reported for ABP- and AF-modified G. Specifically, the ABP modification at G1 resulted in a mixture of 67% major groove B-type (B) and 33% stacked (S) conformers, while at the ABP modification at G2 exclusively resulted in the B-conformer. The AF modification at G1 and G2 lead to 25%:75% and 83%:17% B:S population ratios, respectively. These differences in preferred conformation are due to an interplay between stabilizing (hydrogen bonding and stacking that is enhanced by lesion planarity) and destabilizing (solvent exposure) forces at the lesion site. Furthermore, while the B-conformer is a thermodynamic stabilizer and the S-conformer is a destabilizer in duplex settings, the situation is reversed at the single strands/double strands (ss/ds) junction. Specifically, the twisted biphenyl is a better stacker at the ss/ds junction than the coplanar AF. Therefore, the ABP modification leads to a stronger strand binding affinity of the ss/ds junction than the AF modification. Overall, the current work provides conformational insights into the role of sequence and lesion effects in modulating DNA replication

Effect of Evodia rutaecarpa (Juss) Benth extract on Alzheimer disease in mice

Purpose: To investigate the protective effect of Evodia rutaecarpa (Juss.) Benth. extract (ERBE) against Alzheimer's disease in 3xTg-AD mice. Methods: The cognitive function of 3xTg-AD mice was assessed using Morris water maze test. The levels of amyloid beta deposits and NeuN in the mouse hippocampus were evaluated by immunohistochemistry. Brain neurotrophic derived factor (BDNF) and tyrosine kinase B (TrkB) expressions were determined by western blot analysis. Results: ERBE treatment significantly ameliorated learning and memory deficits in AD mice, as shown by increased time spent in the target zone during probe tests. The escape latency in the animals treated with 400 mg/kg ERBE (20.5 ± 1.3 s) was significantly higher than untreated 3xTg-AD mice (12.4 ± 1.3 s, p < 0.01). In addition, ERBE significantly decreased Aβ deposits, increased NeuN-positive cells, and upregulated the expressions of BDNF (1.4 ± 0.2, p < 0.05) and TrkB (1.1 ± 0.2, p < 0.05) in 3xTg AD mice. Conclusion: The results suggest that ERBE administration may be a useful strategy for treating memory impairment induced by several neurodegenerative diseases. Keywords: Evodia rutaecarpa, Alzheimer, Memory impairment, NeuN-positive cell

Identification of SARS-CoV-2 Main Protease Inhibitors from a Library of Minor Cannabinoids by Biochemical Inhibition Assay and Surface Plasmon Resonance Characterized Binding Affinity

The replication of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is mediated by its main protease (Mpro), which is a plausible therapeutic target for coronavirus disease 2019 (COVID-19). Although numerous in silico studies reported the potential inhibitory effects of natural products including cannabis and cannabinoids on SARS-CoV-2 Mpro, their anti-Mpro activities are not well validated by biological experimental data. Herein, a library of minor cannabinoids belonging to several chemotypes including tetrahydrocannabinols, cannabidiols, cannabigerols, cannabichromenes, cannabinodiols, cannabicyclols, cannabinols, and cannabitriols was evaluated for their anti-Mpro activity using a biochemical assay. Additionally, the binding affinities and molecular interactions between the active cannabinoids and the Mpro protein were studied by a biophysical technique (surface plasmon resonance; SPR) and molecular docking, respectively. Cannabinoids tetrahydrocannabutol and cannabigerolic acid were the most active Mpro inhibitors (IC50 = 3.62 and 14.40 μM, respectively) and cannabigerolic acid had a binding affinity KD=2.16×10−4 role= presentation \u3e=2.16×10−4 M). A preliminary structure and activity relationship study revealed that the anti-Mpro role= presentation \u3eMpro effects of cannabinoids were influenced by the decarboxylation of cannabinoids and the length of cannabinoids’ alkyl side chain. Findings from the biochemical, biophysical, and computational assays support the growing evidence of cannabinoids’ inhibitory effects on SARS-CoV-2 Mpro

Learning Translation Rules from Bilingual English - Filipino Corpus

PACLIC 19 / Taipei, taiwan / December 1-3, 200

Probing the Effect of Bulky Lesion-Induced Replication Fork Conformational Heterogeneity Using 4-Aminobiphenyl-Modified DNA

Bulky organic carcinogens are activated in vivo and subsequently react with nucleobases of cellular DNA to produce adducts. Some of these DNA adducts exist in multiple conformations that are slowly interconverted to one another. Different conformations have been implicated in different mutagenic and repair outcomes. However, studies on the conformation-specific inhibition of replication, which is more relevant to cell survival, are scarce, presumably due to the structural dynamics of DNA lesions at the replication fork. It is difficult to capture the exact nature of replication inhibition by existing end-point assays, which usually detect either the ensemble of consequences of all the conformers or the culmination of all cellular behaviors, such as mutagenicity or survival rate. We previously reported very unusual sequence-dependent conformational heterogeneities involving FABP-modified DNA under different sequence contexts (TG1*G2T [67%B:33%S] and TG1G2*T [100%B], G*, N-(2′-deoxyguanosin-8-yl)-4′-fluoro-4-aminobiphenyl) (Cai et al. Nucleic Acids Research, 46, 6356–6370 (2018)). In the present study, we attempted to correlate the in vitro inhibition of polymerase activity to different conformations from a single FABP-modified DNA lesion. We utilized a combination of surface plasmon resonance (SPR) and HPLC-based steady-state kinetics to reveal the differences in terms of binding affinity and inhibition with polymerase between these two conformers (67%B:33%S and 100%B)